Selected PUBLICATIONS
2024
- Jianghua Sun, Tuuli-Marjaana Koski, Jacob D. Wickham, Yuri N. Baranchikov, Kathryn E. Bushley. Emerald Ash Borer Management and Research: Decades of Damage and Still Expanding. 2024. Annual Review of Entomology, Vol. 69 (Volume publication January 2024). Published online September 14, 2023. https://doi.org/10.1146/annurev-ento-012323-032231.
- Monica Watson, Georgiana May, Kathryn E. Bushley. 2023. Sources of fungal symbionts in the microbiome of a mobile insect host, Spodoptera frugiperda. Microbial Ecology. 2023 Aug; 86(2): 900-913. https://link.springer.com/article/10.1007/s00248-022-02140-3.
- Rodrigo A. Olarte, Rebecca Hall, Javier F. Tabima, Dean Malvick, Kathryn E. Bushley. 2022. Genetic diversity and aggressiveness of Fusarium virguliforme isolates across the Midwestern United States. Phytopathology. Vol. 112 (6). https://apsjournals.apsnet.org/doi/10.1094/PHYTO-05-21-0191-R.
- Deepak Haarith, Dong-gyu Kim, Senyu Chen, Kathryn E. Bushley. 2021. Growth chamber and greenhouse screening of promising in vitro fungal biological control candidates for the soybean cyst nematode (Heterodera glycines). Biological Control. Vol. 160: Article 104635. https://doi.org/10.1016/j.biocontrol.2021.104635.
- Gbadamassi Dossa, Yunqiang Yang, Weiming Hu, EN Paudel, Doug Schaefer, Yong-Ping Yang, Kun-Fang Cao, Jian-Chu Xu, Kathryn Bushley, and Rhett Harrison (2021). Fungal succession in decomposing woody debris across a tropical forest disturbance gradient. Soil Biology and Biochemistry. 155. https://doi.org/10.1016/j.soilbio.2021.108142
- Benjamin W. Held, Sofia Simeto, Nickolas N. Rajtar, Alissa J. Cotton, David N. Showalter, Kathryn E. Bushley, Robert A. Blanchette. 2021. Fungi associated with galleries of the emerald ash borer. Fungal Biology, Vol. 125 (7): 551-559. https://doi.org/10.1016/j.funbio.2021.02.004.
- Emile Gluck-Thaler, Sajeet Haridas, Igor Grigoriev, Pedro W. Crous, Westerdijk, Joseph Spatafora, Kathryn Bushley, Jason C. Slot. 2020. Shared linkage reveals new dimensions of chemodiversity in the largest class of fungi. Molecular Biology and Evolution, Volume 37 (10): 2838–2856. https://doi.org/10.1093/molbev/msaa122.
- Yi Li, Lan Jiang, Ke Wang, Hai-Jun Wu, Rui-Heng Yang, Yu-Jing Yan, Kathryn E. Bushley, David L. Hawksworth, Zujian Wu, and Yi-Jian Yao. RIP mutated ITS genes in populations of Ophiocordyceps sinensis and their implications for molecular systematics. 2020. IMA Fungus. 11: Article18. https://doi.org/10.1186/s43008-020-00040-0.
- Deepak Haarith*, Dong-gyu Kim, Noah B. Strom*, Senyu Chen, and Kathryn E. Bushley. 2020. In-vitro screening of a culturable Soybean Cyst Nematode cyst mycobiome for potential biological control agents and biopesticides. Phytopathology. Vol. 10 (8): 1388-1397. https://doi.org/10.1094/PHYTO-01-20-0015-R.
- Mudassir Iqbal, Martin Broberg, *Deepak Haarith, Anders Broberg, Kathryn E. Bushley, Mikael Brandström Durling, Maria Viketoft, Dan Funck Jensen, Mukesh Dubey, Magnus Karlsson. 2020. Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome‐wide association mapping. Evolutionary Applications, Jun 2;13(9):2264-2283. https://doi.org/10.1111/eva.13001.
- Zhang, Wei, Yu, Haiying, Lv, Yunxue, Bushley, Kathryn, Wickham, Jacob, Gao, Shenghan, Hu, Songnian, Zhao, Lilin, Sun, Jianghua. 2020. Gene family expansion of pinewood nematode to detoxify its host defense chemicals. Molecular Ecology, 07 February 2020, https://doi.org/10.1111/mec.15378.
- Strom, Noah, Hu, Weiming, Haarith, Deepak M., Chen, Senyu Y., Bushley, Kathryn E. 2020. Interactions between soil properties, fungal communities, the soybean cyst nematode, and crop yield under continuous corn and soybean monoculture. Applied Soil Ecology, 147:14. https://doi.org/10.1016/j.apsoil.2019.103388.
- Hu, Weiming, Strom, Noah, Haarith, Deepak, Bushley, Chen, Senyu, and Bushley, Kathryn E. 2019. Seasonal variation and crop sequences shape the structure of bacterial communities in cysts of soybean cyst nematode. Frontiers in Microbiology. Frontiers in Microbiology, 21 November 2019. doi.org/10.3389/fmicb.2019.02671.
- Strom, Noah, Hu, Weiming, Chen, Senyu, Bushley, Kathryn E. 2019. Corn and soybean host root endophytic fungi with toxicity towards the soybean cyst nematode. Phytopathology. Published Online 21 Oct 2019. doi.org/10.1094/PHYTO-07-19-0243-R.
- Strom, Noah, Hu, Weiming, Chen, Senyu, Bushley, Kathryn E.. Continuous Monoculture Shapes Root and Rhizosphere Fungal Communities of Corn and Soybean Cyst Infested Soil. Phytobiomes. 5 November 2019. https://doi.org/10.1094/PBIOMES-05-19-0024-R.
- Haarith, Deepak, Hu, Weiming, Kim, Dong-gyu, Showalter, David, Chen, Senyu, Bushley, Kathryn E.. 2019. Culturable mycobiome of soya bean cyst nematode (Heterodera glycines) cysts from a long-term soya bean-corn rotation system is dominated by Fusarium. Volume 42, December 2019, 100857. https://doi.org/10.1016/j.funeco.2019.08.001.
- Olarte, R.A., Menke, J., Zhang Y., Sullivan, S., Slot, J. C., Huang, Y, J., Badalamenti, J. P., Quandt A.C., Spatafora, J.W., and Bushley, K.E.. 2019. Chromosome Rearrangements Shape the Diversification of Secondary Metabolism in the Cyclosporin Producing Fungus Tolypocladium inflatum. BMC Genomics. 20, Article number: 120. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-5399-x.
- Bajaj, Ruchika, Huang, Yinyin, Gebrechristos, Sebhat, Mikolajczyk, Brian, Brown, Heather, Prasad, Ram, Varma, Ajit, Bushley, Kathryn E.. Transcriptional responses of soybean roots to colonization with the root endophytic fungus Piriformospora indica reveals altered phenylpropanoid and secondary metabolism. 2018. Nature Scientific Reports. 8(1); 10227. doi:10.1038/s41598-018-26809-3. www.nature.com/articles/s41598-018-26809-3.
- Weiming Hu, Noah Strom,Deepak Haarith, Senyu Chen, and Kathryn E. Bushley. Mycobiome of Cysts of the Soybean Cyst Nematode Under Long Term Crop Rotation. Frontiers in Microbiology. Mar 16 (9): 386. https://doi.org/10.3389/fmicb.2018.00386.
- Yang, X. Q., Feng, P., Yin, Y.. Bushley, K.. Spatafora, J. W. Wang, C. S. Cyclosporine Biosynthesis in Tolypocladium inflatum Benefits Fungal Adaptation to the Environment. 2018. Mbio: 9(5): 14.
- Siddhanta, S. Paidi, S., Bushley, K., Prasad, R., Barman, I. Exploring morphological and biochemical linkages in fungal growth with label-free light sheet microscopy and Raman spectroscopy. 2017. ChemPhysChem 18(1): 72-78. onlinelibrary.wiley.com/doi/full/10.1002/cphc.201601386.
- Castell-Miller, C.V., Gutierrez-Gonzelez, J.J., Jin Tu, Z., Bushley, K.E., Hainaut, M., Henrissat, B., Samac, D.A.. 2016. Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.). PloS One 11 (6): e0154122. journals.plos.org/plosone/article?id=10.1371/journal.pone.0154122.
- Strom, N. and Bushley, K.E.. Two genomes are better than one: history, genetics, and biotechnological applications of fungal heterokaryons. 2016. Fungal Biol Biotechnol 3:4. fungalbiolbiotech.biomedcentral.com/articles/10.1186/s40694-016-0022-x.
- Quandt, A.C., Bushley, K. E., and Spatafora, J.W. 2015. The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptiabiotics. BMC Genomics, 16:553. bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1777-9.
- Spatafora, J.W. and Bushley, Kathryn E. 2015. Phylogenomics and evolution of secondary metabolism in plant-associated fungi. Current Opinion in Plant Biology, 26-37-44. doi.org/10.1016/j.pbi.2015.05.030.
- Bajaj, Ruchika, Hu, Weiming, Huang, Yin Yin, Chen, Senyu, Prasad, Ram, Varma, Ajit, Bushley, Kathryn E.. 2015. The beneficial root endophyte Piriformospora indica reduces egg density of the soybean cyst nematode. Biological Control 90: 193-199. doi.org/10.1016/j.biocontrol.2015.05.021.
- Yiling Lai, Keke Liu, Xinyu Zhang, Xiaoling Zhang, Kuan Li, Niuniu Wang, Chi Shu, Yunpeng Wu, Chengshu Wang, Kathryn E. Bushley, Meichun Xiang, Xingzhong Liu. 2014. Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode endoparasitic fungus Hirsutella minnesotensis. Genome Biology and Evolution 6 (11): 3077-3093. academic.oup.com/gbe/article/6/11/3077/2399168.
- Kathryn E. Bushley, Rajani Raja, Pankaj Jaiswal, Jason S. Cumbie, Mariko Nonogaki, Alexander E. Boyd, C. Alisha Owensby, Brian J. Knaus, Justin Elser, Daniel Miller, Yanming Di, Kerry L. McPhail, Joseph W. Spatafora. 2013. The Genome of Tolypocladium inflatum: Evolution, Organization and Expression of the Cyclosporin Biosynthetic Gene Cluster. PLoS Genetics 9(6): e1003496. journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003496.
- Kathryn E. Bushley, Wenjing Wang, Yi Li, Xiao-liang Wang, Joseph W. Spatafora, and Yijian Yao. Isolation and characterization of the MAT1-1 mating type locus and evidence for selfing in the Chinese medicinal fungus Ophiocordyceps sinensis. 2013. Fungal Biology 117(9): 599-610.
- Bradford J. Condon, Yueqiang Leng, Dongliang Wu, Kathryn E. Bushley, Robin A. Ohm, Robert Otillar, Joel Martin, Wendy Schackwitz, Jane Grimwood, NurAinIzzati MohdZainudin, Chunsheng Xue, Rui Wang, Viola A. Manning, Braham Dhillon, Zheng Jin Tu, Brian J. Steffenson, Asaf Salamov, Hui Sun, Steve Lowry, Kurt LaButti, James Han, Alex Copeland, Erika Lindquist, Kerrie Barry, Jeremy Schmutz, Scott Baker, Lynda M. Ciuffetti, Igor V. Grigoriev, Shaobin Zhong, and B. Gillian Turgeon. 2013. Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens. PLoS Genetics 9(1). journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003233.
- Bushley, Kathryn E. and Turgeon, B. Gillian. 2010. Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships. BMC Evolutionary Biology 10: Article number 26. bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-10-26.
- Bushley, Kathryn E. and B. Gillian Turgeon. 2008. Module evolution and substrate specificity of fungal intracellular siderophore NRPS synthetases. BMC Evolutionary Biology 8: Article numbe r328. bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-8-328.
- B. Gillian Turgeon, Shinichi Oide, Kathryn E. Bushley. 2008. Creating and screening Cochliobolus heterostrophus non-ribosomal peptide synthetase mutants. Mycological Research. 2008 Feb;112 (Pt 2): 200-6.
- Ruchika Bajaj, Ram Prasad, Ajit Varma, and Kathryn E. Bushley. 2017. The Role of Arbuscular Mycorrhizal Fungi and the Mycorrhizal-Like Fungus Piriformospora indica in Biocontrol of Plant Parasitic Nematodes in Mycorrhiza - Eco-Physiology, Secondary Metabolites, Nanomaterials, edited Ajit Varma, Ram Prasad, and Narendra Tuteja, Springer International Publishing, pp. 43-56.
- Turgeon, B. Gillian and Bushley, Kathryn E. 2009. Secondary metabolism. In Cellular and Molecular Biology of Filamentous Fungi, edited by K. Borkovich, D. Ebbole, M. Momany. ASM press pp. 376-395.